We are proud to announce a new release of IntOGen, release v03. This release includes major improvements in terms of data content and results.

For detailed information about new features in v03 look at this blog post.

In addition we have recently included data from the International Cancer Genome Consortium (ICGC) in IntOGen, which you can browse following this link http://icgc.intogen.org

For detailed information about browsing ICGC data in IntOGen look at this blog post.

Somatic mutations detected by projects of the International Cancer Genome Consortium (ICGC) are now included in IntOGen.

For more information look at this blog post.

Browse ICGC data in IntOGen at: http://icgc.intogen.org

We have recently initiated a blog about our projects, including IntOGen. Follow the posts related to IntOGen at the following link.
http://bg.upf.edu/blog/tag/intogen/

IntOGen was presented this last weekend at the CSHL Meeting on Personal Genomes. The talk was given by Christian Perez-Llamas and he presented the main features of the current version and the advances of IntOGen 2.0 to store, analyze and visualize next generation sequencing data from cancer samples.

Folow this link to see the slides of the presentation.

We are organizing the three days Integrative Cancer Genomics Course at the Gulbenkian Training Program in Bioinformatics. 8-10 Nov 2010 in Oeiras (Portugal).

In this course we will teach how to use IntOGen, among other resources, for the integration, analysis and visualization of oncogenomics data.

For more information and to apply go to: http://gtpb.igc.gulbenkian.pt/bicourses/ICG10/

Biomart is a popular query-oriented data management system. Now you can download IntOGen data using Biomart system.
This allows the download of IntOGen results after selecting and filtering your data of interest.

You can access it at: http://biomart.intogen.org

The data in IntOGen has been updated: Copy Number Alterations data has been recalculated to fix a strand bias error and mutations data from COSMIC has been updated.

Now IntOGen incorporate an option to have suggestions of datasets from users.

If there is any particular experiment that you would like to see included in IntOGen and is currently missing, you can now fill up a simple form to suggest it to us, and we will try to include it as soon as possible.

http://news.intogen.org/suggest-a-dataset/

Gitools is a framework for analysis and visualization of genomic data. Data and results are represented as browsable heatmaps. Gitools allows to import data directly from IntOGen and Biomart.

With Gitools IntOGen users can now download, explore and operate over IntOGen data. Check the tutorials for case study 1 to see how to use IntOGen data in Gitools.

IntOGen results can be consulted through Ensembl. When you visit a gene page you can view IntOGen results for that gene by selecting IntOGen in the External Data section.

See for example the information from IntOGen of BRCA2 in Ensembl. (The first time you’ll need to click ‘Configure this page’, select ‘IntOGen’ and click ‘Save and Close’).